Below is a table of the standard field names and associated units for use in submitting data to the SeaBASS bio-optical archive. The field names are not case sensitive. Use the search bar or the find function in your browser to search the table for words or patterns found in the field names, units or descriptions. Please contact SeaBASS staff if you want to discuss adding new fields.
Special notes regarding wavelength-specific measurements: There are two different ways to indicate wavelengths (nm) in a SeaBASS file. If metadata such as date, location, or depth vary within the data, then append the wavelength number to the field name for every measurement combination. For example, downwelling irradiance ('Ed') measured at 412.3 nm is 'Ed412.3' (listed as separate columns alongside other Ed measurements, like Ed416.2, Ed419, etc.) Alternately, if date, location, and depth are assumed to be approximately constant for all measurements in the file, then use the field 'wavelength' to provide a column of the measured wavelengths and don't include them as part of the field names (this pivoted layout is commonly used for reporting spectrophotometric measurements or other measurements that use the data_type=scan keyword).
Two additional tables are provided below (Field Name Suffixes & Modifiers). The reusable naming conventions in those tables are used to create new field names without having to add dozens or hundreds of variations to the Table of Field Names and Units. For example, "_sd" (for standard deviation) appears in the table of suffixes and may be appended to any existing SeaBASS field name (e.g., "chl_sd" or "Rrs510_sd".) Similarly, field-specific names can be created ad infinitum using _bincount (i.e., number of averaged samples), and _quality. The table of modifiers allows extra information to be part of field names, typically to indicate versions of measurements that are either more specific or modified. For example, modifiers are used to denote size-fractionated measurements (see _#umfilt and _#umprefilt), specific excitation or emission wavelengths, or polarized measurements. Field names may be constructing by combing entries from multiple tables, with any applicable wavelength first, followed by "Modifiers", followed by a "Suffix".
Table of Contents
| Field name | Units | Description |
|---|---|---|
| aa_alanine | nmol/L | alanine amino acid concentration |
| aa_arginine | nmol/L | arginine amino acid concentration |
| aa_aspartic_acid | nmol/L | aspartic acid amino acid concentration |
| aa_beta-alanine | nmol/L | beta-alanine amino acid concentration |
| aa_gamma_amino_butyric_acid | nmol/L | gamma_amino_butyric_acid amino acid concentration |
| aa_glutamic_acid | nmol/L | glutamic_acid amino acid concentration |
| aa_glycine | nmol/L | glycine amino acid concentration |
| aa_histidine | nmol/L | histidine amino acid concentration |
| aa_isoleucine | nmol/L | isoleucine amino acid concentration |
| aa_leucine | nmol/L | leucine amino acid concentration |
| aa_lysine | nmol/L | lysine amino acid concentration |
| aa_methionine | nmol/L | methionine amino acid concentration |
| aa_phenylalanine | nmol/L | phenylalanine amino acid concentration |
| aa_serine | nmol/L | serine amino acid concentration |
| aa_taurine | nmol/L | taurine amino acid concentration |
| aa_threonine | nmol/L | threonine amino acid concentration |
| aa_tyrosine | nmol/L | tyrosine amino acid concentration |
| aa_valine | nmol/L | valine amino acid concentration |
| a | 1/m | Total absorption coefficient (aw + ap + ag) |
| a*ph | m^2/mg | Chlorophyll a specific absorption coefficient |
| a*srfa | m^2/mg | Specific absorption coefficient of Suwanee River Fulvic Acid standard |
| aaer | 1/m | Absorption coefficient of atmospheric aerosols |
| abs | unitless | Absorbance |
| abs* | m^2/mg | Carbon specific absorbance |
| abs_ad | unitless | Absorbance (Optical Density) of non-algal detritus |
| abs_ag | unitless | Absorbance (Optical Density) of Gelbstoff |
| abs_ap | unitless | Absorbance (Optical Density) of particles (abs_ad + abs_aph) |
| abs_blank_ad | unitless | Absorbance of a blank (or unused) filter pad for non-algal detritus. |
| abs_blank_ag | unitless | Absorbance of a blank (or unused) filter pad for Gelbstoff. |
| abs_blank_ap | unitless | Absorbance of a blank (or unused) filter pad for particles. |
| abs_nacl | unitless | Absorbance of NaCl solution (use with the _###ppt suffix) |
| abs_zero | unitless | Absorbance of air (no sample) collected after the baseline but before the formal "blank" scans. Data should be spectrally flat about zero. |
| abundance | none | Number of cells observed |
| abun | cells/L | Concentration of cells observed |
| abun_bacterioplankton | cells/L | Abundance concentration of bacterioplankton |
| abun_phyto | cells/L | Abundance concentration of phytoplankton |
| abun_zoop | organisms/L | Abundance concentration of zooplankton |
| ad | 1/m | Absorption coefficient of non-algal detritus or particles (NAP) |
| ad_model | 1/m | Absorption coefficient of non-algal detritus or particles (NAP) that has been exponentially fit or smoothed |
| ad_unc | 1/m | Accumulated estimate of standard uncertainty associated with the derivation of the absorption coefficient of non-algal detritus (ad) via error propagation through the absorption equation. See section 5.3.4 of IOCCG's "Volume 1: Inherent Optical Property Measurements and Protocols: Absorption Coefficient" (2018). |
| adg | 1/m | Absorption coefficient of non-algal detritus + Gelbstoff (ad + ag) |
| ag | 1/m | Absorption coefficient of Gelbstoff |
| ag_model | 1/m | Absorption coefficient of gelbstoff (i.e., CDOM) that has been exponentially fitted or smoothed |
| agp | 1/m | Absorption coefficient of Gelbstoff + particles (ag + ap) |
| asrfa | 1/m | Absorption coefficient of Suwanee River Fulvic Acid standard |
| Allo | mg/m^3 | HPLC Alloxanthin |
| alpha-beta-Car | mg/m^3 | HPLC Alpha (Beta,epsilon) + Beta (Beta,beta) Carotenes |
| altitude | m | Altitude above sea level |
| amplitude | unitless | Amplitude use during calibration of oxygen sensors |
| AMC | umol | Concentration of 7-Amino-4-methylcoumarin's fluorescent molecules without an associated substrate (used for the calibration curve in flow cytometry). |
| AMC-Leu | umol/L/hr | Rate of substrate cleavage for L-Leucine-7-amido-4-methylcoumarin hydrochloride |
| angstrom | unitless | Angstrom exponent [submitters should include explicit calculation method in comments and documentation] |
| Anth | mg/m^3 | HPLC Antheraxanthin |
| AOT | unitless | Aerosol Optical Thickness (sometimes referred to as tau or taua) |
| AOU_kg | mL/L | Apparent Oxygen Utilization |
| AOU | umol/kg | Apparent Oxygen Utilization |
| ap | 1/m | Absorption coefficient of particles (ad + aph) |
| ap_unc | 1/m | Accumulated estimate of standard uncertainty associated with the derivation of the absorption coefficient of particles (ap) via error propagation through the absorption equation. See section 5.3.4 of IOCCG's "Volume 1: Inherent Optical Property Measurements and Protocols: Absorption Coefficient" (2018). |
| aph | 1/m | Absorption coefficient of phytoplankton |
| aph_model | 1/m | Absorption coefficient of phytoplankton that has been exponentially fit or smoothed |
| aph_unc | 1/m | Accumulated estimate of standard uncertainty associated with the derivation of the absorption coefficient of phytoplankton (aph) via error propagation through the absorption equation. See section 5.3.4 of IOCCG's " Volume 1: Inherent Optical Property Measurements and Protocols: Absorption Coefficient" (2018). |
| area_cross_section | um^2 | Cross-sectional area of the target detected within the ROI determined by means specified in the image processing method or protocol document. |
| area_based_diameter | um | Area-based diameter of the target detected within the ROI determined by means specified in the image processing method or protocol document. |
| Ar_amps | amps | Peak intensity of Argon (Ar) measured using EIMS |
| associatedMedia | none | A unique persistent identifier of the media associated with the occurrence. The field provides the unique imagery file name corresponding to the source of the ROI or a URL pointing to a permanent landing page for the ROI image. |
| associated_files | none | File name of an associated file. Must be used with associated_file_type. Please include the file suffix in the entry. If multiple entries are applicable, separate them with the pipe character: | To be used with field: associated_file_type If individual files are referenced but are part of a TAR archive bundle, be sure to use the associated_archives and associated_archive_types headers. |
| associated_file_types | none | File type of an associated file. Please contact SeaBASS staff before using this field to verify that your file type is supported. Valid entries for this field are: DNA-FASTQ, DNA-FASTA (for files relating to DNA analysis), BENTHIC (for images relating to benthic type and cover), metadata_sediment_trap (for additional trap informations such as coordinates or ancillary data), imaging_UVP (for UVP imagery and ancillary data),imaging_flowcam (for Flow Cam imagery and ancillary data), imaging_epifluorescence (for imagery collected with epifluorescence microscopy), and imaging_microscopy (for any images collected using traditional microscopy). If multiple entries are applicable, separate them with the pipe character: | To be used with field: associated_files |
| Asta | mg/m^3 | HPLC Astaxanthin |
| At | degreesC | Air temperature |
| aw | 1/m | Absorption coefficient of water |
| A578_A434 | none | Ratio of absorbance of seawater using dyes 578 and 434 |
| b | 1/m | Total scattering coefficient (bw + bp) |
| Ba_138_134_d_delta | per_mil | Total Ba-isotopic composition |
| bactP | pmol/L/hr | Bacterioplankton production |
| bb | 1/m | Total backscattering coefficient (bbw + bbp) |
| bb_counts | counts | Uncalibrated total backscattering coefficient (bbw + bbp) |
| bbp | 1/m | Backscattering coefficient of particles |
| bbp_bp | unitless | Ratio of the backscattering coefficient of particles (bbp) to the total backscattering coefficient (bp) |
| bbp_gamma | unitless | Backscattering coefficient of particles spectral slope (the exponent of the power-law fit) |
| bbw | 1/m | Backscattering coefficient of water |
| BChl_a | mg/m^3 | HPLC Bacteriochlorophyll a |
| benthic_type | none | Description of the benthic seafloor community or substrate. |
| beta-beta-Car | mg/m^3 | HPLC Beta-Carotene (Beta,beta-Carotene) |
| beta-epi-Car | mg/m^3 | HPLC Alpha-Carotene (Beta,epsilon-Carotene) |
| beta-psi-Car | mg/m^3 | HPLC Gamma-Carotene (Beta,psi-Carotene) |
| bin_depth | um | Nominal or center depth for each data bin |
| bin_diameter_center | um | size bin limit for particle size distribution measurements (e.g. for coulter counter) |
| bin_diameter_lower | um | size bin limit for particle size distribution measurements (e.g. for coulter counter) |
| bin_diameter_upper | um | size bin limit for particle size distribution measurements (e.g. for coulter counter) |
| bincount | none | Number of records averaged into a bin or reported measurement |
| biomass_microzoop | mg/m^3 | Microzooplankton biomass |
| biotic_setting | none | Biotic Setting, Biotic Component, level 1 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| biotic_class | none | Biotic Class, Biotic Component, level 2 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| biotic_subclass | none | Biotic Subclass, Biotic Component, level 3 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| biotic_group | none | Biotic Group, Biotic Component, level 4 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| biotic_community | none | Biotic Community, Biotic Component, level 5 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| biovolume | um^3 | Biovolume for the target detected within the ROI determined by means specified in the biovolume calculation method or protocol document. |
| biovol_bacterioplankton | um^3/cell | Mean (estimated) volume per bacterial cell. |
| bottle | none | Number used to identify a specific bottle within an array of bottle samples collected |
| BoundingBox_1 | pixels | The horizontal coordinate of the bottom left corner of an image (or matrix). |
| BoundingBox_2 | pixels | The vertical coordinate of the bottom left corner of an image (or matrix). |
| BoundingBox_3 | pixels | Measure of the length of an image in pixels. |
| BoundingBox_4 | pixels | Measure of the height of an image in pixels. |
| bp | 1/m | Scattering coefficient of particles |
| BSi | mmol/m^3 | Biogenic silica |
| But-fuco | mg/m^3 | HPLC 19'-Butanoyloxyfucoxanthin |
| bw | 1/m | Scattering coefficient of water |
| c | 1/m | Beam attenuation coefficient |
| C2H3N_H | ppbv | VOCC concentration of (C2H3N)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| C2H4O_H | ppbv | VOCC concentration of (C2H4O)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| C2H6S_H | ppbv | VOCC concentration of (C2H6S)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| C3H6O_H | ppbv | VOCC concentration of (C3H6O)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| C5H8_H | ppbv | VOCC concentration of (C5H8)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| C6H6_H | ppbv | VOCC concentration of (C6H6)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| Cantha | mg/m^3 | HPLC Canthaxanthin |
| cast | none | Cast id or number |
| cdmf | volts | CDOM fluorescence (may be used in combination with suffixes _ex### and/or _em###, like so: cdmf_ex###_em###; ex = excitation wavelength; em = emission wavelength) |
| cdmf_counts | counts | CDOM fluorescence (see "cdmf") expressed in units of counts |
| cdmf_ru | RU | CDOM fluorescence (see "cdmf") expressed in units of Raman Units |
| cdmf_rfu | RFU | CDOM fluorescence (see "cdmf") expressed in units of RFU |
| cdom | mg/m^3 | Concentration of chromophoric dissolved organic matter |
| cdomf | ppb | calibrated CDOM fluorescence measurements expressed in ppb QSE (CDOM fluorescence may be used in combination with suffixes _ex### and/or _em###, like so: cdomf_ex###_em###; ex = excitation wavelength; em = emission wavelength) |
| Centroid_1 | pixels | The horizontal coordinate, pixel index from the left |
| Centroid_2 | pixels | The vertical coordinate, pixel index from the bottom |
| cg | 1/m | Attenuation coefficient of Gelbstoff |
| cgp | 1/m | Attenuation coefficient of Gelbstoff + particles (c - cw = agp + bp) |
| CH4O_H | ppbv | VOCC concentration of (CH4O)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| CH4S_H | ppbv | VOCC concentrations of (CH4S)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| Chl | mg/m^3 | Chlorophyll a derived fluorometrically/spectrophotometrically (e.g., "extracted" Chl) |
| Chl_experiment | mg/m^3 | Chlorophyll a derived via experiment, or experimental methods. See specific documentation for more information. |
| Chl_lineheight | mg/m^3 | Chlorophyll a derived using particulate absorption line height method |
| Chl_stimf | mg/m^3 | Chlorophyll a derived from a calibrated in situ fluorometer |
| Chl_a | mg/m^3 | HPLC Chlorophyll a (MV_Chl_a plus allomers and epimers) |
| Chl_a_allom | mg/m^3 | HPLC Chlorophyll a allomers |
| Chl_a_prime | mg/m^3 | HPLC Chlorophyll a epimer |
| Chl_b | mg/m^3 | HPLC Chlorophyll b |
| Chl_c | mg/m^3 | HPLC Chlorophyll c |
| Chl_c1 | mg/m^3 | HPLC Chlorophyll c1 |
| Chl_c1c2 | mg/m^3 | HPLC Chlorophyll c1 + c2 + Mg_DVP |
| Chl_c2 | mg/m^3 | HPLC Chlorophyll c2 |
| Chl_c3 | mg/m^3 | HPLC Chlorophyll c3 |
| Chlide_a | mg/m^3 | HPLC Chlorophyllide a |
| Chlide_b | mg/m^3 | HPLC Chlorophyllide b |
| Circularity | none | Defines the roundness of objects. |
| chors_id | none | CHORS HPLC processing identification number |
| cloud | % | Percent cloud cover |
| cnw | 1/m | Attenuation coefficient of Gelbstoff + particles (obsolete; see cgp) |
| CO2_amps | amps | Peak intensity of CO2 measured using EIMS |
| conc_Ba_total | nmol/L | Total concentration of Barium |
| conc_particles | particles/L | Concentration in particles per liter |
| conc_Pb_210 | dpm/L | Concentration of Lead 210 |
| conc_Po_210 | dpm/L | Concentration of Polonium 210 |
| conc_Th_234 | dpm/L | Concentration of Thorium 234 |
| conc_U_238 | dpm/L | Concentration of Uranium 238 |
| cond | mmho/cm | Conductivity |
| cp | 1/m | Beam attenuation coefficient of particles (ap + bp) |
| cp_gamma | unitless | Particulate beam attenuation spectral slope (the exponent of the power-law fit) |
| cp_gamma_RMSE | unitless | Root mean squared error (RMSE) evaluation of the goodness of fit of cp_gamma (spectral slope) |
| Croco | mg/m^3 | HPLC Crocoxanthin |
| cycle | none | Incrementing counter describing the sampling interval of the instrument. Relevant to the PTR-TOF/MS. |
| cw | 1/m | Beam attenuation coefficient of water (aw + bw) |
| data_provider_category_automated | none | A category used by the data provider to name the organism or particle for an automated classification, not necessarily a scientific name (e.g., pennate or detritus). |
| data_provider_category_manual | none | A category used by the data provider to name the organism or particle for a manual identification, not necessarily a scientific name. |
| date | yyyymmdd | Sample date |
| date_end | yyyymmdd | Date sampling stopped (only needed for extended measurements, e.g., multi-day integration measurements for sediment traps; also see "time_end") |
| date_processed | yyyymmdd | Date the sample was processed |
| date_recovery | yyyymmdd | Date instrumentation was recovered from the field (only needed for extended measurements, e.g., multi-day integration measurements for sediment traps; also see "time_recovery") |
| date_resurface | yyyymmdd | Date instrumentation resurfaced from a submerged deployment (e.g., used for non-buoyant sediment traps) |
| date_start | yyyymmdd | Date sampling began (only needed for extended measurements, e.g., multi-day integration measurements for sediment traps; also see "time_start") |
| day | dd | Sample day |
| DCAA | nM | Dissolved combined amino acid concentration |
| depth | m | Depth of measurement |
| dewpoint | degreesC | Dew point temperature |
| Diadchr | mg/m^3 | HPLC Diadinochrome |
| Diadino | mg/m^3 | HPLC Diadinoxanthin |
| Diato | mg/m^3 | HPLC Diatoxanthin |
| DIC | umol/kg | Dissolved inorganic carbon (per kg) |
| DIC_L | umol/L | Dissolved inorganic carbon (per L, preferred units for satellite val) |
| Dino | mg/m^3 | HPLC Dinoxanthin |
| DMSA | ppt | Concentration of dimethyl sulfide (DMS) in the atmosphere |
| DMSSW | nmol/L | Concentration of dimethyl sulfide (DMS) in sea water |
| DNA | mg/m^3 | DNA (DeoxyriboNucleic Acid) concentration within a water volume |
| DOC | umol/kg | Dissolved organic carbon (per kg) |
| DOC_L | umol/L | Dissolved organic carbon (per L; preferred units for validation) |
| DP | mg/m^3 | Total diagnostic pigments (PSC + Allo + Zea + Tot_Chl_b) |
| DV_Chl_a | mg/m^3 | HPLC Divinyl Chorophyll a |
| DV_Chl_b | mg/m^3 | HPLC Divinyl Chorophyll b |
| Echin | mg/m^3 | HPLC Echinenone |
| Ed | uW/cm^2/nm | Downwelling irradiance (planar measurements only, for scalar measurements use scalar fields) |
| EdGND | volts | Dark current values for Ed sensor |
| elapsed_time | seconds | Elapsed time |
| Elw | uW/cm^2 | Downwelling irradiance over the infrared spectrum, 3 to 40 um |
| Epar | uE/cm^2/s | Profiled PAR (planar measurements only, for scalar measurements use scalar fields) |
| epi-epi-Car | mg/m^3 | HPLC Epsilon-Carotene (Epsilon,epsilon-Carotene) |
| equivalent_spherical_diameter | um | Equivalent spherical diameter of the target detected within the ROI determined by means specified in the image processing method or protocol document. |
| Es | uW/cm^2/nm | Downwelling surface irradiance (planar measurements only, for scalar measurements use scalar fields) |
| EsGND | volts | Dark current values for Es sensor |
| Esky | uW/cm^2/nm | Downwelling sky irradiance |
| Esun | uW/cm^2/nm | Downwelling sun irradiance (direct normal solar irradiance) |
| Esw | uW/cm^2 | Downwelling irradiance over the solar spectrum, 0.3 to 3 um |
| Et-8-carot | mg/m^3 | HPLC Ethyl-apo-8'-carotene |
| Et-chlide_a | mg/m^3 | HPLC Ethyl Chlorophyllide a |
| Et-chlide_b | mg/m^3 | HPLC Ethyl Chlorophyllide b |
| Eu | uW/cm^2/nm | Upwelling irradiance |
| EuGND | volts | Dark current values for Eu sensor |
| EuPAR | uE/cm^2/s | Profiled upwelling PAR (planar measurements only, for scalar measurements use scalar fields) |
| E_scalar | uW/cm^2/nm | Scalar irradiance |
| Ed_scalar | uW/cm^2/nm | Downwelling scalar irradiance |
| Eu_scalar | uW/cm^2/nm | Upwelling scalar irradiance |
| EPAR_scalar | uE/cm^2/s | Scalar PAR irradiance |
| EdPAR_scalar | uE/cm^2/s | Downwelling scalar PAR irradiance |
| EuPAR_scalar | uE/cm^2/s | Upwelling scalar PAR irradiance |
| exp_id | none | Differentiates between subunits of BCO-DMO projects |
| F0 | uW/cm^2/nm | Extraterrestrial solar irradiance |
| F-initial | unitless | Minimum fluorescence in darkness. Fast Repetition Rate Fluorescence measurement, commonly abbreviated as F0 |
| Fm | unitless | Maximum fluorescence in darkness. Fast Repetition Rate Fluorescence measurement |
| Fv_Fm | unitless | Maximum photochemical efficiency. Fast Repetition Rate Fluorescence measurement, commonly abbreviated as Fv/Fm |
| fecalpellet_production_carbon_carbonweight | mg/mg/hr | Zooplankton fecal pellet production in Carbon (carbon weight) |
| fecalpellet_production_carbon_dryweight | mg/mg/hr | Zooplankton fecal pellet production in Carbon (dry weight) |
| flux_sampling_method | none |
Flux_sampling_method must be included to characterize flux measurements in a SeaBASS file, along with flux_submethod, flux_calibration_method, and flux_sinking_speed_method. Text values are restricted to the following list:
|
| flux_submethod | none |
Flux_submethod must be included to characterize flux measurements in a SeaBASS file, along with flux_sampling_method, flux_calibration_method, and flux_sinking_speed_method. Text values are restricted to the following list:
|
| flux_calibration_method | none |
Flux_calibration_method must be included to characterize flux measurements in a SeaBASS file (if relevant, otherwise set to missing value), along with flux_sampling_method, flux_submethod, and flux_sinking_speed_method. Text values are restricted to the following list:
|
| flux_sinking_speed_method | none |
Flux_sinking_speed_method must be included to characterize flux measurements in a SeaBASS file (if relevant, otherwise set to missing value), along with flux_sampling_method, flux_submethod, and flux_calibration_method. Text values are restricted to the following list:
|
| flux_ATN | m^2_m^-2_d^-1 | Rate of increase of accumulated particles' attenuance (characterize methods with flux_sampling_method, etc.) |
| flux_Ba | mmol_m^-2_d^-1 | Flux of barium (characterize methods with flux_sampling_method, etc.) |
| flux_bSi | mmol_m^-2_d^-1 | Flux of biogenic silica (characterize methods with flux_sampling_method, etc.) |
| flux_mass | mg_m^-2_d^-1 | Total dry mass flux of particulate matter (characterize methods with flux_sampling_method, etc.) |
| flux_particles | particles/m^2/d | Flux of particles (characterize methods with flux_sampling_method, etc.). |
| flux_P | mmol_m^-2_d^-1 | Flux of total phosophorus (characterize methods with flux_sampling_method, etc.) |
| flux_Pb_210 | dpm_m^-2_d^-1 | Flux of lead 210 (characterize methods with flux_sampling_method, etc.) |
| flux_PC | mmol_m^-2_d^-1 | Flux of Particulate Carbon (characterize methods with flux_sampling_method, etc.) |
| flux_PC_ATN | mmol_m^-2_d^-1 | Flux of Particulate Carbon based on empirical calibration with flux_ATN (characterize methods with flux_sampling_method, etc.) |
| flux_PIC | mmol_m^-2_d^-1 | Flux of Particulate Inorganic Carbon (characterize methods with flux_sampling_method, etc.) |
| flux_POC | mmol_m^-2_d^-1 | Flux of Particulate Organic Carbon (characterize methods with flux_sampling_method, etc.) |
| flux_Po_210 | dpm_m^-2_d^-1 | Flux of polonium 210 (characterize methods with flux_sampling_method, etc.) |
| flux_PN | mmol_m^-2_d^-1 | Flux of Particulate Nitrogen (characterize methods with flux_sampling_method, etc.) |
| flux_Th_234 | dpm_m^-2_d^-1 | Flux of Thorium 234 (characterize methods with flux_sampling_method, etc.) |
| FL-A | arbunits | Area of the signal of emission by fluorescence (flow cytometry). May be used with _ex###_em### field modifiers. |
| FL-H | arbunits | Height of the signal of emission by fluorescence (flow cytometry). May be used with _ex###_em### field modifiers. |
| Fpe | RFU | Phycoerythrin fluorescence derived from a calibrated in situ fluorometer expressed in units of RFU |
| FSC-A | arbunits | Area of the signal of light scattered in the forward direction from the laser interrogating particles (flow cytometry). |
| FSC-H | arbunits | Height of the signal of light scattered in the forward direction from the laser interrogating particles (flow cytometry). |
| FSCpar-H | arbunits | Height of the signal of light that has been aligned parallel to the original polarization of the laser interrogating particles (flow cytometry). |
| FSCperp-H | arbunits | Height of the signal of light that has been depolarized from the original polarization of the laser interrogating particles (flow cytometry). |
| Fuco | mg/m^3 | HPLC Fucoxanthin |
| g | d^-1 | Grazing Rate |
| g_herb | d^-1 | Herbivorous Grazing Rate (i.e., Herbivore Induced Mortality) |
| geoform_tectonic_setting | none | Geoform Component Tectonic Subcomponent (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| geoform_physiographic_setting | none | Geoform Component Physiographic Setting Subcomponent (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| geoform_origin | none | Geoform origin (CMECS Units, Geoform Subcomponent, entry value should be text that does NOT contain the file's delimiter) |
| geoform | none | Geoform (CMECS Units, Geoform Subcomponent, entry value should be text that does NOT contain the file's delimiter) |
| geoform_type | none | Geoform type (CMECS Units, Geoform Subcomponent, entry value should be text that does NOT contain the file's delimiter) |
| GPP | mg/m^3/d | Gross Primary Productivity |
| Gyro | mg/m^3 | HPLC Gyroxanthin-Diester |
| H2O_amps | amps | Peak intensity of H2O measured using EIMS |
| heading | degrees | platform's heading (e.g., ship's), in degrees |
| Hex-fuco | mg/m^3 | HPLC 19'-Hexanoyloxyfucoxanthin |
| Hex-kfuco | mg/m^3 | HPLC 19'-Hexanoyloxy-4-ketofucoxanthin |
| hour | hh | Sample hour |
| hpl_id | none | HPL HPLC processing identification number |
| hplc_gsfc_id | none | NASA GSFC HPLC processing idenfication number (i.e. 'GSFC HPLC lab sampler code') |
| incubation_duration | hh | Incubation time |
| iso_C2H3N_H | ppbv | VOCC concentration of (13C2H3N)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| iso_C2H4O_H | ppbv | VOCC concentration of d3-acetaldehyde (C2HD3O)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| iso_C2H6S_H | ppbv | VOCC concentration of d3-dimethylsulfide (C2D3H3S)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| iso_C3H6O_H | ppbv | VOCC concentration of d6-acetone (C3D6O)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| iso_CH4O_H | ppbv | VOCC concentration of (13CH4O)H+ in the air evolved from the experimental chambers that are measured by the PTR-TOF/MS. Use with headers /chemical_formula= and /mass_to_charge=. |
| It | degreesC | Instrument temperature |
| Kd | 1/m | Diffuse attenuation coefficient of Ed |
| Kl | 1/m | Diffuse attenuation coefficient of Lu |
| Knf | 1/m | Diffuse attenuation coefficient of natf |
| Kpar | 1/m | Diffuse attenuation coefficient of PAR |
| Ku | 1/m | Diffuse attenuation coefficient of Eu |
| lat | degrees | Sample latitude (decimal fractions; -90 to 90) |
| lat_end | degrees | Latitude where sampling ended (only needed for extended measurements, e.g., multi-day integration measurements for drifting sediment traps) |
| lat_recovery | degrees | Latitude where instrumentation was recovered from the field (only needed for extended measurements, e.g., multi-day integration measurements for sediment traps) |
| lat_resurface | degrees | Latitude where instrumentation resurfaced from a submerged deployment (e.g., used for non-buoyant sediment traps) |
| lat_start | degrees | Latitude where sampling started (only needed for extended measurements, e.g., multi-day integration measurements for drifting sediment traps) |
| length_fish | mm | Total length of a sample fish |
| length_representation | um | Representation of length of the target detected within the ROI or largest mesh size for which the target could be retained, determined by means specified in the image processing method or protocol document. |
| lightlevel | % | Light sample was exposed to, relative to the ambient or experimental intensity |
| lon | degrees | Sample longitude (decimal fractions; -180 to 180) |
| lon_end | degrees | Longitude where sampling ended (only needed for extended measurements, e.g., multi-day integration measurements for drifting sediment traps) |
| lon_recovery | degrees | Longitude where instrumentation was recovered from the field (only needed for extended measurements, e.g., multi-day integration measurements for sediment traps) |
| lon_resurface | degrees | Longitude where instrumentation resurfaced from a submerged deployment (e.g., used for non-buoyant sediment traps) |
| lon_start | degrees | Longitude where sampling started (only needed for extended measurements, e.g., multi-day integration measurements for drifting sediment traps) |
| lp_CAD | mg/m^3 | lignin phenol coumaric acid |
| lp_FAD | mg/m^3 | lignin phenol ferulic acid |
| lp_PAD | mg/m^3 | lignin phenol p-hydroxybenzoic acid |
| lp_PAL | mg/m^3 | lignin phenol p-hydroxybenzaldehyde |
| lp_PON | mg/m^3 | lignin phenol _p_-hydroxyacetophenone |
| lp_SAD | mg/m^3 | lignin phenol syringic acid |
| lp_SAL | mg/m^3 | lignin phenol syringaldehyde |
| lp_SON | mg/m^3 | lignin phenol acetosyringone |
| lp_VAD | mg/m^3 | lignin phenol vanillic acid |
| lp_VAL | mg/m^3 | lignin phenol vanillin |
| lp_VON | mg/m^3 | lignin phenol acetovanillone |
| Lplaq | uW/cm^2/nm/sr | radiance measurement from which reflectance and downwelling irradiance are estimated, usually known as the gray plaque when collecting handheld above water radiometry |
| Lref | uW/cm^2/nm/sr | Reference radiance when using a white plaque for handheld |
| LSi | mmol/m^3 | Lithogenic silica |
| Lsky | uW/cm^2/nm/sr | Sky radiance |
| Lt | uW/cm^2/nm/sr | Total water radiance |
| Lu | uW/cm^2/nm/sr | Upwelling radiance |
| LuGND | volts | Dark current values for Lu sensor |
| Lut | mg/m^3 | HPLC Lutein |
| Lw | uW/cm^2/nm/sr | Water leaving radiance |
| Lw_unc | uW/cm^2/nm/sr | Accumulated estimate of standard uncertainty associated with the derivation of water leaving radiance (Lw) via error propagation through the air-water interface. |
| Lwn | uW/cm^2/nm/sr | Normalized water leaving radiance (Lwn = Lw*F0/Es) |
| Lwnex | uW/cm^2/nm/sr | Exact normalized water leaving radiance ( e.g., Morel et al. 2002 ) |
| Lyco | mg/m^3 | HPLC Lycopene |
| MajorAxisLength_pxl | pixels | Defines the length of major axis if an ellipse is fit over the region of interest. |
| MinorAxisLength_pxl | pixels | Defines the length of minor axis if an ellipse is fit over the region of interest. |
| Me-chlide_a | mg/m^3 | HPLC Methyl Chlorophyllide a |
| Me-chlide_b | mg/m^3 | HPLC Methyl Chlorophyllide b |
| Mg_DVP | mg/m^3 | HPLC Mg 2,4 divinyl pheoporphyrin a5 monomethyl ester |
| minute | mn | Sample minute |
| Monado | mg/m^3 | HPLC Monadoxanthin |
| month | mo | Sample month |
| mPF | none | Microplankton proportion factor ([Fuco + Perid] / DP) |
| MSV | mm^3/L | Marine Snow Volume per unit volume of seawater |
| MUF | umol | Concentration of 4-Methylumbelliferone's fluorescent molecules without an associated substrate (used for the calibration curve in flow cytometry). |
| MUF-But | umol/L/hr | Rate of substrate cleavage for 4-Methylumbelliferyl butyrate |
| MUF-Glu | umol/L/hr | Rate of substrate cleavage for 4-Methylumbelliferyl beta-D-glucopyranoside |
| MUF-PO4 | umol/L/hr | Rate of substrate cleavage for 4-Methylumbelliferyl phosphate |
| MV_Chl_a | mg/m^3 | HPLC Monovinyl Chorophyll a |
| MV_Chl_b | mg/m^3 | HPLC Monovinyl Chorophyll b |
| mz | unitless | Mass-to-charge ratio, used to describe proton-transfer-reaction time-of-flight mass spectrometer (PTR-TOF/MS) measurements |
| N2avg | s^-2 | The mean squared buoyancy frequency (Brunt–Väisälä frequency) between the surface and measurement depth |
| N2_amps | amps | Peak intensity of N2 measured using EIMS |
| N2_Ar_ratio | unitless | Ratio between N2 and Argon (Ar) peak intensities measured using EIMS |
| N2_O2_ratio | unitless | Ratio between N2 and O2 peak intensities measured using EIMS |
| N2_fix | ug/m^3/d | Nitrogen Fixation Rates |
| nadir | degrees | Sensor nadir angle (the nadir is the downward facing viewing geometry, opposite the zenith) |
| nanoeukaryote | (see Field Name Suffixes table) | Phytoplankton taxonomic label for nanoeukaryote. Use in combination with the supported suffixes in the Field Name Suffixes Table. |
| natf | nE/m^2/sr/s | natural fluorescence of chlorophyll a |
| Neo | mg/m^3 | HPLC Neoxanthin |
| net | none | Net number from 0-8 |
| net_interval | m | Net tow distance traveled |
| net_split | unitless |
Correction factor used for MOCNESS or other net systems that represents the proportion of the net tow that was analyzed. Typically, a fraction of the tow in decimal format. For example, if only one fourth of the net sample was imaged by a ZooSCAN the correction factor would be 0.25. Alternatively, if all of the sample was analyzed, for example if the entirety of the net sample was measured for dry mass, the correction factor would be 1. Field is required for ZooSCAN datasets. |
| NCCb | mmol/m^2/d | Net Benthic Community Calcification, expressed as the millimole production of CaCO3 per benthic area per day |
| NCPb | mmol/m^2/d | Net Benthic Community Productivity, expressed as the millimole production of O2 per benthic area per day |
| NCP_O2_Ar_ratio_continuous | mmol/m^2/d | Net Community Productivity, expressed as the millimole production of O2 per area per day and calculated using the O2/Ar ratio from the ship’s flow-through seawater line by Equilibrator Inlet Mass Spectrometry (EIMS) |
| NH4 | mmol/m^3 | NH4 |
| NO2 | mmol/m^3 | Nitrite |
| NO2_NO3 | mmol/m^3 | NO2 + NO3 |
| no2ot | unitless | NO2 Optical Depth or NO2 Optical Thickness |
| NO3 | mmol/m^3 | Nitrate |
| nPF | none | Nanoplankton proportion factor ([Hex-fuco + But-fuco + Allo] / DP) |
| NPP | mg/m^3/d | Net Primary Productivity |
| nrb | photoelectrons/usec/shot | Normalized relative backscatter |
| O2_amps | amps | Peak intensity of O2 measured using EIMS |
| O2_Ar_ratio | unitless | Ratio between O2 and Argon (Ar) peak intensities measured using EIMS |
| o3ot | unitless | Ozone Optical Thickness or Ozone Optical Depth |
| oxygen | ml/L | Dissolved oxygen |
| oxygen_kg | umol/kg | Dissolved oxygen |
| oxygen_consumption_tempcorr | uL/h | Oxygen consumption at the temperature that the organisms would have been at (temperature corrected) |
| oxygen_saturation | % | Percent oxygen saturation |
| oxygen_phase | degrees | Oxygen phase |
| Oz | dobson | Column Ozone |
| P-457 | mg/m^3 | HPLC P-457 |
| PAR | uE/cm^2/s | PAR measured at the sea surface |
| Phycocyanin | mg/m^3 | Phycocyanin derived fluorometrically/spectrophotometrically |
| PC | mmol/m^3 | Concentration of Particulate Carbon |
| pCO2 | uatm | Surface water partial pressure of carbon dioxide |
| Perid | mg/m^3 | HPLC Peridinin |
| pDrift | mbar | Pressure in the drift tube of the PTR-TOF/MS. |
| Perimeter_pxl | pixels | Measures the total length of the object boundary |
| pH | none | pH |
| PHAEO | mg/m^3 | Total phaeopigment concentration |
| Phide_a | mg/m^3 | HPLC Pheophorbide a |
| Phide_b | mg/m^3 | HPLC Pheophorbide b |
| Phide_c | mg/m^3 | HPLC Pheophorbide c |
| Phytin_a | mg/m^3 | HPLC Pheophytin a |
| Phytin_b | mg/m^3 | HPLC Pheophytin b |
| Phytin_c | mg/m^3 | HPLC Pheophytin c |
| Phytyl-chl_c | mg/m^3 | HPLC Phytylated Chlorophyll c |
| phyto_carbon | ug/L | Phytoplankton carbon concentration |
| PIC | mol/m^3 | Particulate inorganic carbon |
| PIM | mg/L | Suspended particulate inorganic matter |
| picoeukaryote | (see Field Name Suffixes table) | Phytoplankton taxonomic label for picoeukaryote. Use in combination with the supported Field Name Suffixes Table. |
| piston_velocity | m/d | Weighted piston velocity |
| pitch | degrees | Instrument pitch |
| pitch_Ed | degrees | Downwelling irradiance instrument pitch |
| pitch_Lu | degrees | Upwelling radiance instrument pitch |
| pitch_Es | degrees | Downwelling surface irradiance instrument pitch |
| PN | mg/m^3 | Particulate nitrogen |
| PN_mmol | mmol/m^3 | Particulate nitrogen |
| PO4 | mmol/m^3 | Phosphate |
| POC | mg/m^3 | Particulate organic carbon |
| POC_cp | mg/m^3 | Particulate organic carbon derived using particulate beam attenuation |
| POH | mg/m^3 | Particulate organic hydrogen |
| POM | mg/L | Suspended particulate organic matter |
| PON | mg/m^3 | Particulate organic nitrogen |
| PP | mgC/mgchla/hr | Primary productivity |
| PPC | mg/m^3 | Photoprotective carotenoids (Allo + Diadino + Diato + Zeo + alpha-beta-Car) |
| PPC_Tcar | none | Ratio of PPC to Tcar |
| PPC_Tpg | none | Ratio of PPC to Tpg |
| pPF | none | Picoplankton proportion factor ([Zea + Tot_chl_b] / DP) |
| PTP | mmol/m^3 | Concentration of total particulate phosphorus |
| Pras | mg/m^3 | HPLC Prasinoxanthin |
| pressure | dbar | Water pressure |
| pressure_atm | mbar | Atmospheric pressure |
| pressure_instrument | mbar | Pressure within the instrument |
| prochlorococcus | (see Field Name Suffixes table) | Phytoplankton taxonomic label for prochlorococcus. Use in combination with the supported Field Name Suffixes listed in the above table, relating to taxonomic types. |
| profile | none | Profile id or number. Positive values are used for upward profiles, and negative values for downward profiles. |
| PSC | mg/m^3 | Photosynthetic carotenoids (But-fuco + Fuco + Hex-fuco + Perid) |
| PSC_Tcar | none | Ratio of PSC to Tcar |
| PSD | uL/L | Particle Size Distribution. Must be used in conjunction with a suffix to specify sizes, e.g., PSD_80.5size (see _###size in table of field name modifiers.) |
| PSD_DNSD | number/m^3/um | Differential number size distribution. Must be used in conjunction with a suffix to specify sizes, e.g., PSD_DNSD_80.5umsize (see _###umsize in table of field name modifiers). Dataset should include the /PSD_bin_size_method and /PSD_bin_size_boundaries metadata headers. |
| PSD_DVSD | uL/m^3/um | Differential volume size distribution. Must be used in conjunction with a suffix to specify sizes, e.g., PSD_DVSD_80.5umsize (see _###umsize in table of field name modifiers). Dataset should include the /PSD_bin_size_method and /PSD_bin_size_boundaries metadata headers. |
| PSP | mg/m^3 | Photosynthetic pigments (PSC + Tchl) |
| PSP_Tpg | none | Ratio of PSP to Tpg |
| pulse_width | seconds | Time duration that the primary trigger channel exceeded the width measurement threshold during an event (flow cytometry). Scientific notation is accepted. |
| pvel | m/s | Profiler velocity |
| Pyrophide_a | mg/m^3 | HPLC Pyropheophorbide a |
| Pyrophytin_a | mg/m^3 | HPLC Pyropheophytin a |
| Pyrophytin_b | mg/m^3 | HPLC Pyropheophytin b |
| Pyrophytin_c | mg/m^3 | HPLC Pyropheophytin c |
| Q | sr | Eu / Lu (equal to pi in diffuse water) |
| quality | none | Analyst-specific data quality flag. A definition of the quality flags should be provided as metadata header comments and within accompanying documentation files. |
| RNA | mg/m^3 | RNA (Ribonucleid Acid) concentration within a water volume |
| R | unitless | Irradiance reflectance (Eu / Ed) |
| R2R_Event | none | Rolling Deck to Repository (R2R) Unique sample event number |
| ratio | unitless | Used for specific ratios. Please contact SeaBASS before using it. |
| rate_diff_O2_dark_incub | mmol/m^3/d |
O2 drawdown rate |
| rate_diff_O2_corrcoef | none | O2 drawdown rate correlation coefficient |
| rate_diff_C_dark_incub | mmol/m^3/d |
C drawdown rate |
| rate_13C_uptake_bottle | mol/L/d,mol_L^-1_d^-1 | Primary productivity determined using 13C. This field should inclute the experiment time (incubation time) "_###hr". |
| rate_15N_uptake_bottle | mol/L/d,mol_L^-1_d^-1 | Rates of nitrogen uptake. This field should inclute the experiment time (incubation time) "_###hr". |
| rate_nitrification | nmol/L/d | Nitrification rate |
| rate_production_DOC_inc | mg/mg_body_C/d | Mass specific (calculated as mg dry mass carbon per individual) excreted dissolved organic carbon per day |
| rate_respiration_carbon_zoop | mg/m^2/d | Zooplankton raspiration rates in mg of Carbon/m^2/d |
| rate_respiration_O2_ind | umol/ind/h | Oxygen consumption rate per organism calculated as the change in oxygen concentration (umol O2 per individual per hour) |
|
rate_respiration_C_ind |
mg/mg_body_C/d | Oxygen consumption rate per organism calculated as the change in carbon concentration (in mg body C assuming 40% zooplankton dry weight was carbon) |
| Rb | unitless | Benthic irradiance reflectance (Lambertian equivalence reflectance) |
| REFI | unitless | Imaginary k(λ) parts of the complex refractive index |
| REFIc | unitless | Imaginary k(λ) parts of the complex refractive index (coarse mode) |
| REFIf | unitless | Imaginary k(λ) parts of the complex refractive index (fine mode) |
| REFR | unitless | The real n(λ) parts of the complex refractive index |
| REFRc | unitless | The real n(λ) parts of the complex refractive index (coarse mode) |
| REFRf | unitless | The real n(λ) parts of the complex refractive index (fine mode) |
| RelAbundance | % | Percent cell abundance of a specific phytoplankton taxonomic type relative to all observed cells. |
| RelAz | degrees | Sensor azimuth angle relative to the solar plane |
| Rf | uW/cm^2/nm/sr | Raman fluorescence (may be used in combination with suffixes _ex### and/or _em###, like so: Rf_ex###_em###; ex = excitation wavelength; em = emission wavelength) |
| rho | unitless | Sea surface reflectance factor (as in Mobley 1999) |
| Rl | 1/sr | Radiance reflectance (Lu/Ed) |
| roll | degrees | Instrument roll |
| roll_Ed | degrees | Downwelling irradiance Instrument roll |
| roll_Lu | degrees | Upwelling radiance instrument roll |
| roll_Es | degrees | Downwelling surface irradiance instrument roll |
| rot | unitless | Rayleigh Optical Depth or Rayleigh Optical Thickness |
| Rpi | unitless | Radiance reflectance with pi (pi*Lu/Ed) |
| rrna_gene | none | Small subunit ribosomes targeted for sequencing (e.g., 16S or 18S) |
| Rrs | 1/sr | Remote sensing reflectance (Lw/Ed). Rrs data should NOT be BRDF corrected. |
| Rrs_unc | 1/sr | Accumulated estimate of standard uncertainty associated with the derivation of remote sensing reflectance (Rrs) via propagation of radiance and irradiance errors through the remote sensing reflectance computations. |
| S_ad | none | Slope of non-algal detritus absorption spectra |
| S_ag | none | Slope of gelbstoff absorption spectra. Please include the wavelength range used for the calculation following this format as an example: s_ag_300nmmin_600nmmax. If only one data value per dataset, please use the following header and format: /s_ag=s_ag_#nmmin_#nmamax:value, where # is wavelength and value is your data value. |
| sal | PSU | Salinity |
| sample | none | Sample number |
| SAZ | degrees | Solar azimuth angle |
| scientificName_automated | none | A scientific name from a recognized taxonomic reference database (e.g., WoRMS, AlgaeBase) at the lowest level that matches the data provider's category for an automated classification paired to a scientificNameID. Generally, the ROI corresponds to an occurrence assigned to a single taxonomic name, e.g., Karenia brevis |
| scientificNameID_automated | none | A life science identifier (LSID) from a recognized taxonomic reference database (e.g., WoRMS, AlgaeBase) at the lowest level that matches the data provider's category for an automated classification. e.g., urn:lsid:marinespecies.org:taxname:233015 where ‘urn:lsid’ indicates the ID that is specific to life science data and is used for all files, marinespecies.org is the url for the reference database WoRMS, and the namespace ‘taxname’ informs the user that the following number represents a unique numerical identifier or taxon identifier in WoRMS. 233015 represents the taxon identifier (AphiaID) in WoRMS for the dinoflagellate species Karenia brevis. |
| scientificName_manual | none | A scientific name from a recognized taxonomic reference database (e.g., World Register of Marine Species, AlgaeBase) at the lowest level that matches the data provider's category, for a manual identification matched to scientificNameID. Generally, the ROI corresponds to an occurrence assigned to a single taxonomic name. |
| scientificNameID_manual | none | A scientific name from a recognized taxonomic reference database (e.g., World Register of Marine Species, AlgaeBase) at the lowest level that matches the data provider's category, for a manual identification matched to scientificNameID. Generally, the ROI corresponds to an occurrence assigned to a single taxonomic name. |
| sdy | ddd | Sequential day of year |
| second | ss | Sample second |
| sensor_azimuth | degrees | Sensor viewing azimuth angle (horizontal angle clockwise from north) |
| SenZ | degrees | Sensor zenith angle |
| sig | mV | Stregth of the raw signal of the sunphotometer |
| sigma_PSII | angstrom^2 | Effective absorption cross-section of photosystem II in darkness |
| sigma_theta | kg/m^3 | Potential density - 1000 kg/m3 |
| sigmaT | kg/m^3 | Density - 1000 kg/m3 |
| SiO4 | mmol/m^3 | Silicic Acid / "Dissolved Silica" |
| Siphn | mg/m^3 | HPLC Siphonein |
| Siphx | mg/m^3 | HPLC Siphonaxanthin |
| sinking_velocity | m/d | Sinking velocity of particles such as fecal pellets |
| SN | none | Instrument serial number |
| speed_f_w | m/s | Speed in the forward direction, relative to water |
| SPM | mg/L | Total suspended particulate matter |
| SSA | unitless | Single scattering Albedo |
| SSC-A | arbunits | Area of the signal of light side scattered from the laser interrogating particles (flow cytometry). |
| SSC-H | arbunits | Height of the signal of light side scattered from the laser interrogating particles (flow cytometry). |
| SST | degreesC | Sea surface temperature |
| station | none | Sample station |
| station_alt_id | none | Alternate sample station identifier (use ONLY if station has already been used as a field name) |
| stimf | volts | Stimulated fluorescence, nominally of chlorophyll a. The suffixes _ex### and _em### may be used to specify wavelengths like so: stimf_ex###_em###; ex = excitation wavelength; em = emission wavelength). Related field: Chl_stimf |
| stimf_counts | counts | Stimulated fluorescence (see "stimf") expressed in units of counts instead of volts |
| stimf_rfu | RFU | Stimulated fluorescence (see "stimf") expressed in units of RFU instead of volts |
| substrate_origin | none | Substrate origin, Substrate Component level 1 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| substrate_class | none | Substrate class, Substrate Component level 2 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| substrate_subclass | none | Substrate subclass, Substrate Component level 3 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| substrate_group | none | Substrate group, Substrate Component level 4 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| Sv | dB |
Time dependent range and volume backscattering (dB relative to m^-1). Acoustics Data. [Speak with SeaBASS staff before submitting this type of data] |
| substrate_subgroup | none | Substrate subgroup, Substrate Component level 5 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| synechococcus | (see Field Name Suffixes table) | Phytoplankton taxonomic label for synechococcus. Use in combination with the supported Field Name Suffixes listed in the above table, relating to taxonomic types. |
| SZ | m | Secchi disk depth |
| SZA | degrees | Solar zenith angle |
| Tacc | mg/m^3 | Total accessory pigments (PPC + PSC + Tot_Chl_b + Tot_Chl_c) |
| Tacc_Tchla | none | Ratio of Tacc to Tot_Chl_a |
| TauAv | ns | Fluorescence kinetics decay time (i.e., fluorescence lifetime of the excited photosynthetic unit) |
| Tcar | mg/m^3 | Total carotenoids (PPC + PSC) |
| Tchl | mg/m^3 | Tot_Chl_a + Tot_Chl_b + Tot_Chl_c |
| TChl_Tcar | none | Ratio of Tchl to Tcar |
| Tchla_Tpg | none | Ratio of Tot_chl_a to Tpg |
| TDN | mmol/m^3 | Total dissolved nitrogen (per volume) |
| TDN_kg | umol/kg | Total dissolved nitrogen (per mass) |
| TEP_bottle | ug_Gxan_equiv/L | Transparent Exopolymer Particles (TEP) in the water (collected via Niskin bottles) |
| TEP_MSC | ug_Gxan_equiv/L | Transparent Exopolymer Particles (TEP) in the water (collected via Marine Snow Catcher) |
| Tdrift | degreesC | Temperature in the drift tube of the PTR-TOF/MS. |
| tilt | degrees | Instrument tilt |
| tilt_Ed | degrees | Downwelling irradiance instrument tilt |
| tilt_Lu | degrees | Upwelling radiance instrument tilt |
| tilt_Es | degrees | Downwelling surface irradiance instrument tilt |
| time | hh:mm:ss | Sample time [GMT] |
| time_end | hh:mm:ss | Time measurements stopped (only needed for extended measurements, e.g., multi-day integration measurements for sediment traps; also see "date_end") [GMT] |
| time_processed | hh:mm:ss | Time the sample was processed [GMT] |
| time_recovery | hh:mm:ss | Time instrumentation was recovered from the field (only needed for extended measurements, e.g., multi-day integration measurements for sediment traps) [GMT] |
| time_resurface | hh:mm:ss | Time instrumentation resurfaced from a submerged deployment (e.g., used for non-buoyant sediment traps) [GMT] |
| time_start | hh:mm:ss | Time sampling began (only needed for extended measurements, e.g., multi-day integration measurements for sediment traps) [GMT] |
| TOC | umol/kg | Total Organic Carbon (per mass) |
| TOC_L | umol/L | Total Organic Carbon (per volume) |
| total_alkalinity | umol/kg | Total alkalinity |
| Total_C | mg/m^3 | Total carbon |
| total_NO2 | Dobson | Atmospheric total nitrate (NO2) |
| Total_precipitable_water | cm | Total precipitable water |
| Tot_Chl_a | mg/m^3 | HPLC DV_Chl_a + MV_Chl_a + Chlide_a + Chl_a_allom + Chl_a_prime |
| Tot_Chl_b | mg/m^3 | HPLC DV_Chl_b + MV_Chl_b |
| Tot_Chl_c | mg/m^3 | HPLC chl_c1 + chl_c2 (i.e., chl_c1c2) + chl_c3 |
| tow | none | Instrument tow number |
| Tpg | mg/m^3 | Total pigment concentration |
| trans | % | Percent transmission |
| turbidity | NTU | Turbidity |
| u | d^-1 | Growth rate (i.e., µ or mu) |
| u_ph | d^-1 | Growth rate of phytoplankton |
| u_zoo | d^-1 | Growth rate of zooplankton |
| Urea | mmol/m^3 | Urea |
| Vauch | mg/m^3 | HPLC Vaucheriaxanthin-ester |
| VelEast | m/s | ADP Velocity East |
| VelNorth | m/s | ADP Velocity North |
| VelUp | m/s | ADP Velocity Up |
| Viola | mg/m^3 | HPLC Violaxanthin |
| volfilt | L | Volume filtered |
| volume | L | Volume used in experiment |
| VOCair | ppbv | Concenctration of Volatile Organic Carbon (VOC) compounds in air measured via a proton-transfer-reaction time-of-flight mass spectrometer (PTR-TOF/MS) |
| VSF | 1/m/sr | Total volume scattering function (VSF### or VSF###_YYYang, where YYY is collection angle). Also called beta. |
| VSFg | 1/m/sr | Gelbstoff volume scattering function, i.e., VSFg = VSFw - VSF(pure water, salinity, and temperature) (VSFg### or VSFp###_YYYang, where YYY is collection angle). Also called beta. |
| VSFp | 1/m/sr | Particulate volume scattering function i.e., VSFp = VSF - VSFw (VSFp### or VSFp###_YYYang, where YYY is collection angle). Also called beta. |
| VSFw | 1/m/sr | Filtered seawater volume scattering function plus VSF sal & temp contributions, i.e., VSFw = VSF - VSFp (VSFw### or VSFw###_YYYang, where YYY is collection angle). Also called beta. |
| water_column_biogeochemical_feature | none | Water Column Biogeochemical Feature Subcomponent (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| water_column_hydroform_class | none | Water Column Hydroform Subcomponent level 1 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| water_column_hydroform | none | Water Column Hydroform Subcomponent level 2 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| water_column_hydroform_type | none | Water Column Hydroform Subcomponent level 3 (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| water_column_layer | none | Water Column Layer Subcomponent (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| water_column_salinity | none | Water Column Salinity Subcomponent (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| water_column_temperature | none | Water Column Temperature Subcomponent (CMECS Units, entry value should be text that does NOT contain the file's delimiter) |
| water_depth | m | The water (bottom) depth where the data were collected |
| waveht | m | Wave height |
| wavelength | nm | Wavelength of measurement |
| wdir | degrees | Wind direction, described in degrees from north, increasing clockwise |
| weight_dry | mg | Sample dry weight |
| weight_wet | mg | Sample wet weight |
| weight_fish | g | Fish total weight in grams |
| weight_gut | g | Fish's gut total weight in grams |
| weight_protein_community | mg/m^3 | Weight of the protein in the mesozooplankton sample |
| weight_protein_sample | mg/sample | Weight of the protein in the whole mesozooplankton community |
| width_representation | um | Representation of width of the target detected within the ROI or smallest mesh size through which the target could pass, determined by means specified in the image processing method or protocol document. |
| wind | m/s | Wind speed |
| Wt | degreesC | Water temperature |
| wvot | unitless | Water vapor optical thickness or water vapor optical density |
| Wvp | cm | Water vapor |
| year | yyyy | Sample year |
| Z_90 | m | Depth of the first optical layer (37% light level) |
| Z_DCM | m | Depth of the deep chlorophyll maximum |
| Z_Eu | m | Depth of the euphotic layer |
| Z_MLD | m | Depth of the mixed layer |
| Z_XML | m | Depth of the active mixing layer |
| Zea | mg/m^3 | HPLC Zeaxanthin |
| zoop_biomass_dry | mg/m^3 | Zooplankton biomass dry weight |
| zoop_biomass_wet | mg/m^3 | Zooplankton biomass wet weight |
| 13CO2_amps | amps | Peak intensity of 13CO2 measured using EIMS |
| 3H_Leu | pmol/kg/hr | Net bacterial production rates (Gross Production - Respiration) are estimated by tracing the incorporation of 3H-labeled leucine into biomass and serve as a proxy for the flux of labile dissolved organic matter through bacteria. |
| 3H_Leu_L | pmol/L/hr | Net bacterial production rates (Gross Production - Respiration) are estimated by tracing the incorporation of 3H-labeled leucine into biomass and serve as a proxy for the flux of labile dissolved organic matter through bacteria. |
The HPLC field names are based on the SCOR (WG 78) abbreviations for each pigment as listed in:
S.W. Jeffrey, R.F.C. Mantoura, and S.W. Wright, Phytoplankton Pigments in Oceanography: Guidelines to Modern Methods, UNESCO Publishing, Paris, France, pp. 661 (1997).
The HPLC sums and ratios are described in Tables 4, 5, and 7 of:
S.B. Hooker and 15 co-authors, The Second SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-2) , NASA Tech. Memo. 2005-212785, NASA Goddard Space Flight Center, Greenbelt, Maryland, pp. 112 (2005).
Usage note: Field name suffixes should be appended to the end of a field name, after any field name modifiers (such as wavelength, excitation, etc). Field name suffixes require the presence of the un-suffixed field name as a separate field entry within the same SeaBASS file (i.e., FCHECK will complain if your file contains chl_sd but not chl).
| Field Suffix | Units | Description |
|---|---|---|
| _bincount | none | The number of measurements (n) averaged into the reported value or bin in the column(s) that "_bincount" is attached to. This suffix allows (n) to be reported for individual data field. There is also a standalone field called "bincount" which may be used instead if only one bincount is needed to describe the contents of the data matrix. |
| _quality | none | An analyst-defined quality flag that is relevant to the base field name. A definition of the quality flags should be provided as metadata header comments and within accompanying documentation files. |
| _cv | unitless | Coefficient of Variation. Append "_cv" to the end of the field name it describes e.g., bb532_cv |
| _sd | same as base field's units | Standard Deviation. Append "_sd" to the end of the field name it describes e.g., chl_sd |
| _se | same as base field's units | Standard Error. Append "_se" to the end of the field name it describes, e.g., chl_se |
| _unc | same as base field's units | Uncertainty associated to the measurement. The method used to determine the uncertainty needs to be included in the metadata or comments. Please contact SeaBASS before using it. |
| _volts | Volts | Raw data in volts |
The following table provides special ways to modify field names, generally for specific cases where it is necessary to index on a second wavelength or to indicate special size filters. These modifiers go after the base name (and wavelength, if applicable) but before any suffix.
| Field Modifiers | Units | Description |
|---|---|---|
| _#ang | does not change base field's units | Collection angle. Append "_#ang" to the end of a field name to indicate the collection angle a measurment (such as VSF) was taken at, where "#" is the angle in degrees, expressed as a float or integer. (For example, if volume scattering function is measured at a collection angle of 124 degrees, the field name would be "vsf_124ang".) |
| _#cilo | does not change base field's units | Confidence interval, lower, where # is to be replaced with the percent the confidence interval was computed for. Append "_#cilo" to the end of the field name it describes to indicate the relative confidence interval at a given percentage, e.g., chl_95cilo |
| _#ciup | does not change base field's units | Confidence interval, upper, where # is to be replaced with the percent the confidence interval was computed for. Append "_#ciup" to the end of the field name it describes to indicate the relative confidence interval at a given percentage, e.g., chl_95ciup |
| _ex# | does not change base field's units | Excitation wavelength. Append "_ex#" to the end of a field name to indicate the wavelength of excitation the measurement was taken at, where "#" would be replaced by the float or integer represenation of wavelength in nm. May be used in combination with "_em#", as such: "cdmf_ex#_em#", where "_ex#" preceeds "_em#". |
| _em# | does not change base field's units | Emission wavelength. Append "_em###" to the end of a field name to indicate the wavelength of emission the measurement was taken at, where "###" would be replaced by the float or integer represenation of wavelength in nm. May be used in combination with "_ex###", as such: "cdmf_ex###_em###", where "_ex#" preceeds "_em#". |
| _#hr | does not change base field's units | Incubation time in hours. Used in NPP field name, for example:rate_13C_uptake_bottle_6h_5umfilt. |
| _#id | does not change base field's units |
_#id is used to provide user-defined field name variations associated with classification information. For example, it can be used for taxonomic groups or size classes. It must be used in conjunction with the metadata header "/id_fields_definitions" (and it is recommended to also add a human-readable list of ids as comments in the header). If "id" is used with two different base fields please number the sequentially and do not repeat the id numbers.
/id_fields_definitions=1id:nanoeukaryotes,2id:picoeukaryotes,3id:net_sample,4id:experiment_sample /fields=u_ph_1id,u_ph_2id,sample_3id,sample_4id...
Please contact SeaBASS administration to discuss use of this field before implementing it.
|
| _#umfilt | does not change base field's units |
Filter pore size in microns (i.e., measured particles are larger than # microns). e.g., ap_10umfilt
Use this suffix to report size fractionated measurements or measurements collected using atypical filter pore sizes. It is unnecessary to add this suffix for standard protocol filter pore sizes (e.g., plain "ap" is appropriate for whole water measurements, rather than "ap_0.7umfilt"). However, include all filter details in your documentation.
|
| _#umprefilt | does not change base field's units |
Filter pore size in microns that the measurement was pre-filtered through (i.e., measured particles are smaller than # microns). e.g., chl_200umprefilt
Use this suffix if needed for reporting size fractionated measurements or other cases where samples passed through a significant filter prior to the reported measurement. It is unnecessary to use this suffix if the measurement implicitly defines dissolved material, as long as standard protocol filter pore sizes were used (e.g., just write "ag", not "ag_0.2umprefilt"). However, include all filter details in your documentation.
|
| _#ppt | does not change base field's units | Parts per thousand. Append "_#ppt" to the end of a field name to indicate the solution's concentration that a measurement was taken in, where "#" is the concentration as a floating point number or integer. (For example, if absorbance is measured at 435.2 nm in a 35.3 ppt sodium-chloride solution, the field name would be "abs_nacl435.2_35.3ppt".) |
| _#size | does not change base field's units | Median bin diameter in microns. Used as a suffix for the field "PSD". |
| _#umsize | does not change base field's units | Median bin diameter in microns. Used as a suffix for the field "PSD_DNSD or PSD_DVSD". |
| _stokes1 | does not change base field's units | First Stokes parameter for characterizing polarization. |
| _stokes2 | does not change base field's units | Second Stokes parameter for characterizing polarization. |
| _stokes3 | does not change base field's units | Third Stokes parameter for characterizing polarization. |
| _stokes4 | does not change base field's units | Fourth Stokes parameter for characterizing polarization. |